Yeah, I'd really want to get that K&N out of there for the test. I mean hell, even if you had to go to the AZone and buy one, have the test, take it back after you're done and tell them you have the wrong air cleaner, so you found an aftermarket set up at a buddy's house. Hate to suggest it, but a guy has to do what a guy has to do when he doesn't have the funds.
And for sure, if it sat that long, get that Cat cleaned up, but do also make sure you've burned off any additives you added to the fuel tank. Put in D, not OD and take it for a freeway drive, keeping the rpms up higher in the 2800-3000 rpm range for 10-20 miles. It won't hurt it a bit, but will get that Cat hot enough and with the higher rpms, blow the **** out of it. Also find the highest content alcohol or ethanol fuel you can find. Higher ethanol means less polutants. Checking the diverter valve is good too. Just cuz AIR is there, doesn't mean it's working properly.