It's possible the alternator is bad.. Wrong type probably wouldn't bolt up and wires wouldn't just plug right in.. When you had trouble with the small 2 wire plug and had to redo it, are you certain you got the wires hooked up properly.. BTW, if nothing has been changed, the correct alternator is either an 10SI or 12SI.. They are interchangeable, the 12SI is higher output..
[EDIT]
I think you said you have gauges instead of warning lights??? The charge warning light provides resistance between the battery and terminal 1 on the alternator.. In gauge equipped vehicles, GM placed a resistor in that wire (or installed a resistor wire) to provide the necessary resistance.. The wire on terminal 2 introduces battery voltage when the ignition is on.. If continuity on either one of these wires/circuits is lost, the alternator will not charge.. Disconnect the plug and use your multimeter to read the voltage with the key on and off.. The voltage at terminal 2 should be the same as battery voltage.. Terminal 1 voltage will be slightly less.. The actual voltage read by the multimeter depends on the load placed on the resistor by the meter... If these voltages check out, your alternator is bad..