Do it in stages to avoid down time.
When you know you can take the truck out of service for a couple of days, pull the RH inner and make the FW mod. That is by far the bulk of the entire conversion.
At that point, pass the wiring and vacuum harnesses through their associated penetrations in the FW (this is a simple step but it is way harder to do after the airhandler is assembled to the FW).
Change the HVAC control panel from "heat only" to the new AC type control panel. Connect the electrical and vacuum harnesses to it. Connect the power lead on the electrical harness to the fuse block. There are 3 vacuum hoses that connect to 2 actuators on the cab side of the air handler. It is much easier to make those connections before the inside air handler is assembled to the FW. Here is the vacuum schematic:
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Assemble as much of the duct work that attaches to the airhandler as you can. Again, this is way easier to do before mounting the AH to the inner FW.
Then, you can assemble both sides of the airhandler to the FW and re-install the inner fender.
On the engine side, hook up the electrical harness to the blower relay, blower motor, low pressure cutout switch. Connect your heater hoses.
Plug off the end of the tubing that goes to the outside air intake damper (BTW that damper motor is located under the wiper cowling and will require an additional hole in the FW for it's vacuum hose).
Plug off the hose that will control the reirc valve as well.
You can deal with these two assemblies at some later date.
Done. You will at that point have a functional HVAC system (with no AC of course but heat and defrost will work).
Then, when you have time, the refrigeration components of the AC system can be installed and activated.