Just got a call from A&A, they said my truck is ready. He said they had not seen this before but some clip broke that holds the governor cover on and the entire cover was missing. He said they took it out and everything looked fine, they fixed the cover and re-installed and it was ok.
I have no idea if all that sounds correct or not. I do know it will still be doing the same thing when I go get it today (shuddering when shifting to 3rd and O/D and shifting way too early).
I'm just going to get it and I think I am going to hope it makes it until I save up for one from Bowtie Overdrives. At least the truck will move under it's own power I guess. I think when these guys test drive they just barely drive it, don't even get it up to highway speeds, because there is no way anyone would get in this truck, put it in drive, and think it shifts normal if you run it even up to 50 mph.