I lot of people hate the QJ. I like it.
First off, there are many, many adjustments which can be made/messed up.
Hesitation means a couple of things.
First the accelerator pump may not be acting or acting too slowly. There should be two holes to put the linkage in on the accelerator pump. The one closest to the fulcrum will make it act more quickly. I have found the newer kits have pumps which tend to come apart in that the cup comes off of the holder and the pump no longer works. Find one that it not thin blue silicone cup.
Primary metering rods are all the same diameter on the thin end. Jet size determines low vacuum mixture. Different rods have different diameters on the thicker part, and the combination of three factors determines cruise mixture...jet size, rod size and rod depth. Depending on the year, there are two ways to control rod depth. The earlier ones had a soft plug below the fuel filter which had to be drilled out to expose a screw. Later ones have an adjustment which can turned from the top of the carb. The deeper the rods go with vacuum, the leaner the cruise mixture.
Secondary control flap is actually the venturi of the secondaries, and has a few adjustments. The flaps are off center and demanded air flow will pull them open. Their bend is the actual venturi of the secondaries. There is a spring which closes it against air flow which if broken or too loose will cause bogging at WOT by allowing the secondary control flap to be open wider then the air flow requires. There is a flat blade screw on the side near the fulcrum for the control flaps and an allen set screw underneath for this spring, which near the fulcrum/shaft of the secondary control flaps. Secondary metering rods are simple and strictly mechanical based on how far open the control flaps are.
There is a vacuum diaphram which normally is the choke pulloff AND secondary shut down. This will cause the secondaries to taper off as you build manifold vacuum...reach speed. There is also a mechanism to disallow the secondary throttle plates from opening if the choke is not fully open...as in "engine too cold for WOT".
All of these things need to be operational for a QJ to work right, but when they are you have good economy with your foot out of it and ample power when needed.